PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0148.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 258aa    MW: 28365.5 Da    PI: 9.845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0148.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-201262256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d +   +r r +lg+++t+eeAa+a+++a+++l+ge
  Kaladp0015s0148.1.p 12 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 62
                         589******.7*********42...35**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-281270IPR001471AP2/ERF domain
CDDcd000187.28E-311271No hitNo description
PfamPF008472.8E-151262IPR001471AP2/ERF domain
PROSITE profilePS5103220.3361269IPR001471AP2/ERF domain
SMARTSM003805.4E-341275IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-201371IPR016177DNA-binding domain
PRINTSPR003672.3E-71324IPR001471AP2/ERF domain
PRINTSPR003672.3E-73551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAMGKAAVVG RRFVGVRQRP SGRWVAEIKD SCQRVRLWLG TYDTPEEAAR AYDEAARALR  60
GENARTNYPY SKRPCGSSVN SFGNGDGNHE LSCSSLKAKL SKSLQSVMGR SSESSKSSKN  120
RVSDPLTFAS VFHLRGNGGP QQYRNDTIDK AVQPSIVVPS HEVNQSSSWD SSSLSDSSPD  180
RVTIHSDTSG SDLTEKFFNI ERLTCPNQTM NWGSMLLDNW QGEFTGNTES SRRKKFKVSS  240
SVMVPPTFSS FPFNDVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-131069363ATERF1
3gcc_A7e-131069363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900171.12e-74PREDICTED: dehydration-responsive element-binding protein 2B-like
TrEMBLA0A0L9VQY56e-74A0A0L9VQY5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SY036e-74A0A0S3SY03_PHAAN; Uncharacterized protein
STRINGPOPTR_0014s07280.11e-66(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-10related to AP2 11